miRBase entry: oan-mir-182

Stem-loop oan-mir-182


Accession
MI0012558
Description
Ornithorhynchus anatinus oan-mir-182 precursor miRNA
Gene family
MIPF0000116; mir-182


Sequence

6650 reads, 98 reads per million, 5 experiments
cccuccugcugugUUUGGCAAUGGUAGAACUCACAcuggugagguaaugggauccgguGGUUCUAGACUUGCCAACUAuggcccgagggcucagccggca
(((((..((((((.(((((((...((((((...((((((..............))))))))))))...))))))).))))))..)))))...........

Structure
-----------     cu      U       UGG      UCA      ugaggu 
           cccuc  gcugug UUGGCAA   UAGAAC   CAcugg      a
           |||||  |||||| |||||||   ||||||   ||||||       
           gggag  cgguAU AACCGUU   AUCUUG   Guggcc      a
acggccgacuc     cc      C       CAG      ---      uagggu 


Annotation confidence Not enough data
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Genome context
10: 4559452-4559551 [-]
Clustered miRNAs
2 other miRNAs are < 10 kb from oan-mir-182
Name Accession Chromosome Start End Strand Confidence




Database links

Mature oan-miR-182-5p

Accession MIMAT0012798
Description Ornithorhynchus anatinus oan-miR-182-5p mature miRNA
Sequence 14 - UUUGGCAAUGGUAGAACUCACA - 35
Evidence experimental
Illumina [2]

Mature oan-miR-182-3p

Accession MIMAT0026955
Description Ornithorhynchus anatinus oan-miR-182-3p mature miRNA
Sequence 59 - GGUUCUAGACUUGCCAACUA - 78
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 18215311
    miRNAminer: a tool for homologous microRNA gene search
    "Artzi S, Kiezun A, Shomron N"
    "BMC Bioinformatics (2008) 9:39

  2. PubMed ID: 23034410
    Birth and expression evolution of mammalian microRNA genes
    "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
    "Genome Res (2013) 23:34-45