Stem-loop rno-mir-490

Accession

MI0012585

Description

Rattus norvegicus rno-mir-490 precursor miRNA

Gene family

MIPF0000229; mir-490

Literature search

8 open access papers mention rno-mir-490
(29 sentences)

Sequence

79721 reads, 271 reads per million, 418 experiments

uggaaaguucauuguucgacaCCAUGGAUCUCCAGGUGGGUcacguuuagauauacacCAACCUGGAGGACUCCAUGCUGuuga
...............((((((.(((((((((((((((.(((...((........))))).)))))))))..)))))).))))))

Structure

uggaaaguucauugu      C      --         G   cac  uua 
               ucgaca CAUGGA  UCUCCAGGU GGU   gu   g
               |||||| ||||||  ||||||||| |||   ||    
               aguuGU GUACCU  GGAGGUCCA Cca   ca   a
---------------      C      CA         A   ---  uau 

Annotation confidence High

Genome context

chr4: 63342943-63343026 [+]

Mature rno-miR-490-5p

• Accession: MIMAT0017356
• Description: Rattus norvegicus rno-miR-490-5p mature miRNA
• Sequence: 22 - CCAUGGAUCUCCAGGUGGGU - 41
• Evidence: experimental ; SOLiD [2]

Mature rno-miR-490-3p

• Accession: MIMAT0012823
• Description: Rattus norvegicus rno-miR-490-3p mature miRNA
• Sequence: 59 - CAACCUGGAGGACUCCAUGCUG - 80
• Evidence: experimental ; SOLiD [2]

References

1. PubMed ID: 20403161
   Small RNA expression and strain specificity in the rat
   Linsen SE, de Wit E, de Bruijn E, Cuppen E
   BMC Genomics (2010) 11:249


2. PubMed ID: 18215311
   miRNAminer: a tool for homologous microRNA gene search
   "Artzi S, Kiezun A, Shomron N"
   "BMC Bioinformatics (2008) 9:39