Stem-loop sequence rno-mir-1224

Accession

MI0012589 (change log)

Description

Rattus norvegicus miR-1224 stem-loop

Gene family

MIPF0000440; mir-1224

Literature search

6 open access papers mention rno-mir-1224
(18 sentences)

Stem-loop

   g      cu          ------    u   accau      c 
5'  ugagga  ggggaggugg      aggg agu     uagagc a
    ||||||  ||||||||||      |||| |||     ||||||  
3'  acuccu  cuucuccacc      uccc ucg     gucucg g
   g      cu          ccccuc    -   acucu      a 

Deep sequencing

17427 reads, 4.84 reads per million, 248 experiments

Confidence

Annotation confidence: high

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Genome context

• Coordinates (Rnor_6.0; GCA_000001895.4): chr11: 83992628-83992712 [-]
• Overlapping transcripts:

  sense

  ENSRNOT00000037612 ; Vwa5b2-201; intron 22

Database links

• EntrezGene:Mir1224
• miRBase Tracker:MI0012589

Mature sequence rno-miR-1224

• Accession: MIMAT0012827
• Sequence: 1 - gugaggacuggggagguggag - 21
• Deep sequencing: 17020 reads, 244 experiments
• Evidence: experimental; SOLiD [2]
• Predicted targets:
  • TargetScanVert:rno-miR-1224
  • miRDB:rno-miR-1224
  • microrna.org:rno-miR-1224

References

1. PMID:18215311 "miRNAminer: a tool for homologous microRNA gene search" Artzi S, Kiezun A, Shomron N BMC Bioinformatics. 9:39(2008).
2. PMID:20403161 "Small RNA expression and strain specificity in the rat" Linsen SE, de Wit E, de Bruijn E, Cuppen E BMC Genomics. 11:249(2010).