Stem-loop rno-mir-511

Accession

MI0012591

Description

Rattus norvegicus rno-mir-511 precursor miRNA

Gene family

MIPF0000807; mir-511

Literature search

5 open access papers mention rno-mir-511
(11 sentences)

Sequence

3623 reads, 21 reads per million, 378 experiments

gauacccacCAUGCCUUUUGCUCUGCACUCaguacauaaucauuugugAAUGUGUAGCAAAAGACAGGAuggggaucca
((..((((((.((.((((((((..((((....((((........))))...)))))))))))).)))).))))..))..

Structure

--  ua    -  A  C        CU    UCag    uaa 
  ga  ccca cC UG CUUUUGCU  GCAC    uaca   u
  ||  |||| || || ||||||||  ||||    ||||    
  cu  gggu GG AC GAAAACGA  UGUG    gugu   c
ac  ag    A  -  A        --    -UAA    uua 

Annotation confidence High

Genome context

chr17: 81382966-81383044 [+]

Mature rno-miR-511-5p

• Accession: MIMAT0012829
• Description: Rattus norvegicus rno-miR-511-5p mature miRNA
• Sequence: 10 - CAUGCCUUUUGCUCUGCACUC - 30
• Evidence: experimental ; SOLiD [2]

Mature rno-miR-511-3p

• Accession: MIMAT0017358
• Description: Rattus norvegicus rno-miR-511-3p mature miRNA
• Sequence: 49 - AAUGUGUAGCAAAAGACAGGA - 69
• Evidence: experimental ; SOLiD [2]

References

1. PubMed ID: 20403161
   Small RNA expression and strain specificity in the rat
   Linsen SE, de Wit E, de Bruijn E, Cuppen E
   BMC Genomics (2010) 11:249


2. PubMed ID: 18215311
   miRNAminer: a tool for homologous microRNA gene search
   "Artzi S, Kiezun A, Shomron N"
   "BMC Bioinformatics (2008) 9:39