Stem-loop sequence rno-mir-615

Accession

MI0012597 (change log)

Description

Rattus norvegicus miR-615 stem-loop

Gene family

MIPF0000342; mir-615

Literature search

3 open access papers mention rno-mir-615
(3 sentences)

Stem-loop

   uc    -    c          uc     u        cu    g ug 
5'   ggga gggg gggagggggg  cccgg gcucggau  cgag g  c
     |||| |||| ||||||||||  ||||| ||||||||  |||| |  u
3'   cccu cccc ccuucucccu  ggguc cgagccug  gcuu u  u
   --    a    -          cu     -        --    g ua 

Deep sequencing

35768 reads, 0.251 reads per million, 399 experiments

Confidence

Annotation confidence: high

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Genome context

• Coordinates (Rnor_6.0; GCA_000001895.4): chr7: 144629019-144629110 [+]
• Overlapping transcripts:

  sense

  ENSRNOT00000022247 ; Hoxc5-201; intron 1

Database links

• EntrezGene:Mir615
• miRBase Tracker:MI0012597

Mature sequence rno-miR-615

• Accession: MIMAT0012835
• Sequence: 17 - ggggguccccggugcucggauc - 38
• Deep sequencing: 921 reads, 204 experiments
• Evidence: not experimental
• Predicted targets:
  • TargetScanVert:rno-miR-615
  • miRDB:rno-miR-615
  • microrna.org:rno-miR-615

References

1. PMID:18215311 "miRNAminer: a tool for homologous microRNA gene search" Artzi S, Kiezun A, Shomron N BMC Bioinformatics. 9:39(2008).