Stem-loop rno-mir-802

Accession

MI0012602

Description

Rattus norvegicus rno-mir-802 precursor miRNA

Gene family

MIPF0000353; mir-802

Sequence

122485 reads, 313 reads per million, 371 experiments

guccuauuauuugcagUCAGUAACAAAGAUUCAUCCUugugucgaucauacagcACGGAGAGUCUUUGUCACUCAGUguaauuaauagccuucacc
...((((((.(((((.(.(((.((((((((((.(((..((((.(......).))))))))))))))))).))).).))))).))))))........

Structure

-----guc      u     g C   A          A   Uu    c au 
        cuauua uugca U AGU ACAAAGAUUC UCC  gugu g  c
        |||||| ||||| | ||| |||||||||| |||  |||| |   
        gauaau aaugU A UCA UGUUUCUGAG AGG  CAcg c  a
ccacuucc      u     G C   C          -   --    a au 

Annotation confidence High

Genome context

chr11: 33570256-33570351 [+]

Mature rno-miR-802-5p

• Accession: MIMAT0012840
• Description: Rattus norvegicus rno-miR-802-5p mature miRNA
• Sequence: 17 - UCAGUAACAAAGAUUCAUCCU - 37
• Evidence: experimental ; SOLiD [2]

Mature rno-miR-802-3p

• Accession: MIMAT0017362
• Description: Rattus norvegicus rno-miR-802-3p mature miRNA
• Sequence: 55 - ACGGAGAGUCUUUGUCACUCAGU - 77
• Evidence: experimental ; SOLiD [2]

References

1. PubMed ID: 20403161
   Small RNA expression and strain specificity in the rat
   Linsen SE, de Wit E, de Bruijn E, Cuppen E
   BMC Genomics (2010) 11:249


2. PubMed ID: 18215311
   miRNAminer: a tool for homologous microRNA gene search
   "Artzi S, Kiezun A, Shomron N"
   "BMC Bioinformatics (2008) 9:39