Stem-loop rno-mir-496

Accession

MI0012622

Description

Rattus norvegicus rno-mir-496 precursor miRNA

Gene family

MIPF0000018; mir-154

Literature search

3 open access papers mention rno-mir-496
(4 sentences)

Sequence

30139 reads, 55 reads per million, 342 experiments

aguguucgaauggAGGUUGUCCAUGGUGUGUUCauuuuauuuaugaugAGUAUUACAUGGCCAAUCUCCuuucggcacu
(((((.((((.((((((((.(((((..(((((((((........)))))))))..))))).)))))))).)))))))))

Structure

     u    u        U     GU         uua 
agugu cgaa ggAGGUUG CCAUG  GUGUUCauu   u
||||| |||| |||||||| |||||  |||||||||    
ucacg gcuu CCUCUAAC GGUAC  UAUGAguag   u
     -    u        C     AU         uau 

Annotation confidence High

Genome context

chr6: 133889283-133889361 [+]

Clustered miRNAs

15 other miRNAs are < 10 kb from rno-mir-496

Mature rno-miR-496-5p

• Accession: MIMAT0017372
• Description: Rattus norvegicus rno-miR-496-5p mature miRNA
• Sequence: 14 - AGGUUGUCCAUGGUGUGUUC - 33
• Evidence: experimental ; SOLiD [2]

Mature rno-miR-496-3p

• Accession: MIMAT0012860
• Description: Rattus norvegicus rno-miR-496-3p mature miRNA
• Sequence: 49 - AGUAUUACAUGGCCAAUCUCC - 69
• Evidence: experimental ; SOLiD [2]

References

1. PubMed ID: 20403161
   Small RNA expression and strain specificity in the rat
   Linsen SE, de Wit E, de Bruijn E, Cuppen E
   BMC Genomics (2010) 11:249


2. PubMed ID: 18215311
   miRNAminer: a tool for homologous microRNA gene search
   "Artzi S, Kiezun A, Shomron N"
   "BMC Bioinformatics (2008) 9:39