Stem-loop eca-mir-1179

Accession

MI0012644

Description

Equus caballus eca-mir-1179 precursor miRNA

Gene family

MIPF0000632; mir-1179

Sequence

gaaagggagAAGCAUUCUUUCAUUGGUUGGuguguauugccucgucagccaaucagaggaugccauuuauccuuuucugacuagcu
((((((((...(((((((((.(((((((((((.(......).))))))))))).)))))))))......)))))))).........

Structure

---------        ---gAA         C           u ua 
         gaaaggga      GCAUUCUUU AUUGGUUGGug g  u
         ||||||||      ||||||||| ||||||||||| |   
         cuuuuccu      cguaggaga uaaccgacugc c  u
ucgaucagu        auuuac         c           u cg 

Annotation confidence Not enough data

Genome context

chr1: 94578238-94578323 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from eca-mir-1179

Mature eca-miR-1179

• Accession: MIMAT0012887
• Description: Equus caballus eca-miR-1179 mature miRNA
• Sequence: 10 - AAGCAUUCUUUCAUUGGUUGG - 30
• Evidence: not_experimental

References

1. PubMed ID: 19406225
   In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
   "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
   "Genomics (2009) 94:125-131