Stem-loop eca-mir-1282

Accession

MI0012646

Description

Equus caballus eca-mir-1282 precursor miRNA

Gene family

MIPF0000587; mir-1282

Sequence

reads, None reads per million, experiments

ccuucuucUCGUUUGCCUUUUUCUGCUUcugcugcaugaucuccgagucccuggggguagagaugauggggcacugggagguaccagagggcaaaaaggac
......(((..((((((((((..((((((((((.(((.(((((..(.(((...))).).))))).))).)))....)))))))..))))))))))..))).

Structure

ccuucu   CG          UC       ----   g   g     cg g   c 
      ucU  UUUGCCUUUU  UGCUUcu    gcu cau aucuc  a ucc  
      |||  ||||||||||  |||||||    ||| ||| |||||  | ||| u
      agg  aaacgggaga  auggagg    cgg gua uagag  u ggg  
-----c   aa          cc       guca   g   g     -a g   g 

Annotation confidence Not enough data

Genome context

chr1: 145282498-145282598 [+]

Mature eca-miR-1282

• Accession: MIMAT0012889
• Description: Equus caballus eca-miR-1282 mature miRNA
• Sequence: 9 - UCGUUUGCCUUUUUCUGCUU - 28
• Evidence: not_experimental

References

1. PubMed ID: 19406225
   In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
   "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
   "Genomics (2009) 94:125-131