Stem-loop sequence eca-mir-7-1

AccessionMI0012661 (change log)
Previous IDseca-mir-7
DescriptionEquus caballus miR-7 stem-loop
Gene family MIPF0000022; mir-7
Literature search

1 open access papers mention eca-mir-7-1
(4 sentences)

Stem-loop 
   u  a     a u     u       ucuu    
5'  gg agacu g gauuu guuguug    gcu 
    || ||||| | ||||| |||||||    || g
3'  cc ucuga c cugaa caacaac    cgc 
   g  g     c -     -       ---c
Get sequence
Deep sequencing
42 reads, 0 reads per million, 2 experiments
Confidence Annotation confidence: not enough data
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Genome context
Coordinates (EquCab2.0; GCF_000002305.2) Overlapping transcripts
chr1: 94574963-94575022 [-]
intergenic
Clustered miRNAs
< 10kb from eca-mir-7-1
eca-mir-1179chr1: 94578238-94578323 [-]
eca-mir-7-1chr1: 94574963-94575022 [-]
Database links

Mature sequence eca-miR-7

Accession MIMAT0012905
Sequence

1 -  

uggaagacuagugauuuuguugu

 - 23

Get sequence
Deep sequencing126 reads, 1 experiments
Evidence not experimental

References

1
PMID:19406225 "In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach" Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y Genomics. 94:125-131(2009).