Stem-loop sequence eca-mir-30c

Accession

MI0012671 (change log)

Description

Equus caballus miR-30c stem-loop

Gene family

MIPF0000005; mir-30

Literature search

4 open access papers mention eca-mir-30c
(8 sentences)

Stem-loop

   a     cu    ugu u       u   aca         ---g  a 
5'  ccaug  guag   g guaaaca ccu   cucucagcu    ug g
    |||||  ||||   | ||||||| |||   |||||||||    ||  
3'  gguac  cguc   c cauuugu ggg   gagggucgg    ac c
   a     --    uuc u       u   --a         ugga  u 

Deep sequencing

7624 reads, 450 reads per million, 2 experiments

Confidence

Annotation confidence: high

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Genome context

• Coordinates (EquCab2.0; GCF_000002305.2): chr2: 17432728-17432816 [-]
• Overlapping transcripts:

  sense

  ENSECAT00000002155 ; NFYC-201; intron 5

Clustered miRNAs

< 10kb from eca-mir-30c

• eca-mir-30e: chr2: 17435650-17435741 [-]
• eca-mir-30c: chr2: 17432728-17432816 [-]

Database links

• EntrezGene:MIR30C
• miRBase Tracker:MI0012671

Mature sequence eca-miR-30c

• Accession: MIMAT0012915
• Sequence: 17 - uguaaacauccuacacucucagc - 39
• Deep sequencing: 15006 reads, 1 experiments
• Evidence: not experimental

References

1. PMID:19406225 "In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach" Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y Genomics. 94:125-131(2009).