Stem-loop sequence eca-mir-30e

Accession

MI0012672 (change log)

Description

Equus caballus miR-30e stem-loop

Gene family

MIPF0000005; mir-30

Literature search

4 open access papers mention eca-mir-30e
(11 sentences)

Stem-loop

   g        uu  ua            uu           g aag u 
5'  ggcagucu  gc  cuguaaacaucc  gacuggaagcu u   g g
    ||||||||  ||  ||||||||||||  ||||||||||| |   |  
3'  ccgucgga  cg  gacauuuguagg  cugacuuucga g   c u
   a        --  gc            --           g aga u 

Deep sequencing

28519 reads, 1.8e+03 reads per million, 2 experiments

Confidence

Annotation confidence: high

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Genome context

• Coordinates (EquCab2.0; GCF_000002305.2): chr2: 17435650-17435741 [-]
• Overlapping transcripts:

  sense

  ENSECAT00000002155 ; NFYC-201; intron 5

Clustered miRNAs

< 10kb from eca-mir-30e

• eca-mir-30e: chr2: 17435650-17435741 [-]
• eca-mir-30c: chr2: 17432728-17432816 [-]

Database links

• EntrezGene:MIR30E
• miRBase Tracker:MI0012672

Mature sequence eca-miR-30e

• Accession: MIMAT0012916
• Sequence: 17 - uguaaacauccuugacuggaag - 38
• Deep sequencing: 25995 reads, 1 experiments
• Evidence: not experimental

References

1. PMID:19406225 "In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach" Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y Genomics. 94:125-131(2009).