miRBase entry: eca-mir-140

Stem-loop eca-mir-140


Accession
MI0012682
Description
Equus caballus eca-mir-140 precursor miRNA
Gene family
MIPF0000085; mir-140

Literature search
7 open access papers mention eca-mir-140
(12 sentences)

Sequence

286 reads, 43 reads per million, 1 experiments
cCAGUGGUUUUACCCUAUGGUAGguuacgucaugcuguucUACCACAGGGUAGAACCACGG
((.(((((((((((((.(((((((.((.((...)))).))))))).)))))))))))))))

Structure
  A             A       u  c  c 
cC GUGGUUUUACCCU UGGUAGg ua gu  
|| ||||||||||||| ||||||| || || a
GG CACCAAGAUGGGA ACCAUcu gu cg  
  -             C       u  -  u 


Annotation confidence High
Do you think this miRNA is real?

Genome context
chr3: 19908675-19908735 [+]

Database links

Mature eca-miR-140-5p

Accession MIMAT0012926
Description Equus caballus eca-miR-140-5p mature miRNA
Sequence 2 - CAGUGGUUUUACCCUAUGGUAG - 23
Evidence not_experimental

Mature eca-miR-140-3p

Accession MIMAT0012927
Description Equus caballus eca-miR-140-3p mature miRNA
Sequence 41 - UACCACAGGGUAGAACCACGG - 61
Evidence not_experimental

References

  1. PubMed ID: 19406225
    In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
    "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
    "Genomics (2009) 94:125-131