Stem-loop sequence eca-mir-140

Accession

MI0012682 (change log)

Description

Equus caballus miR-140 stem-loop

Gene family

MIPF0000085; mir-140

Literature search

7 open access papers mention eca-mir-140
(12 sentences)

Stem-loop

   cca             a       uu   uc 
5'    gugguuuuacccu ugguagg  acg  a
      ||||||||||||| |||||||  |||   
3'    caccaagauggga accaucu  ugu  u
   -gg             c       --   cg 

Deep sequencing

374 reads, 0 reads per million, 2 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (EquCab2.0; GCF_000002305.2): chr3: 19908675-19908735 [+]
• Overlapping transcripts:

  sense

  ENSECAT00000028381 ; eca-mir-140-201; exon 1

  ENSECAT00000007141 ; WWP2-201; intron 15

Database links

• EntrezGene:MIR140
• miRBase Tracker:MI0012682

Mature sequence eca-miR-140-5p

• Accession: MIMAT0012926
• Sequence: 2 - cagugguuuuacccuaugguag - 23
• Deep sequencing: 152 reads, 1 experiments
• Evidence: not experimental

Mature sequence eca-miR-140-3p

• Accession: MIMAT0012927
• Sequence: 41 - uaccacaggguagaaccacgg - 61
• Deep sequencing: 221 reads, 1 experiments
• Evidence: not experimental

References

1. PMID:19406225 "In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach" Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y Genomics. 94:125-131(2009).