miRBase entry: eca-mir-148a

Stem-loop eca-mir-148a


Accession
MI0012689
Description
Equus caballus eca-mir-148a precursor miRNA
Gene family
MIPF0000056; mir-148

Literature search
2 open access papers mention eca-mir-148a
(2 sentences)

Sequence

74947 reads, 11345 reads per million, 1 experiments
gaggcaaaguucugagacacuccgacucugaauaugauagaagUCAGUGCACUACAGAACUUUGUcuc
((((((((((((((((.((((..(((((((.......))).))))))))..)).))))))))))))))

Structure
              -  -a    cc    -   aa 
gaggcaaaguucug ag  cacu  gacu cug  u
|||||||||||||| ||  ||||  |||| |||  a
cucUGUUUCAAGAC UC  GUGA  CUga gau  u
              A  AC    --    a   ag 


Annotation confidence High
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Genome context
chr4: 57171932-57171999 [-]

Database links

Mature eca-miR-148a

Accession MIMAT0012935
Description Equus caballus eca-miR-148a mature miRNA
Sequence 44 - UCAGUGCACUACAGAACUUUGU - 65
Evidence not_experimental

References

  1. PubMed ID: 19406225
    In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
    "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
    "Genomics (2009) 94:125-131