miRBase entry: eca-mir-183

Stem-loop eca-mir-183


Accession
MI0012692
Description
Equus caballus eca-mir-183 precursor miRNA
Gene family
MIPF0000066; mir-183


Sequence

27 reads, 4 reads per million, 1 experiments
cugugUAUGGCACUGGUAGAAUUCACUgugaacagucucggucagugaauuaccgaagggccauaaaca
.(((.((((((.((((((..(((((((((((......)))..))))))))))))..)).)))))).)))

Structure
c   g      A  --    GA        --   ac 
 ugu UAUGGC CU  GGUA  AUUCACUg  uga  a
 ||| |||||| ||  ||||  ||||||||  |||   
 aca auaccg ga  ccau  uaagugac  gcu  g
-   a      g  ag    --        ug   cu 


Annotation confidence Not enough data
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Genome context
chr4: 84472003-84472071 [-]
Clustered miRNAs
2 other miRNAs are < 10 kb from eca-mir-183
Name Accession Chromosome Start End Strand Confidence




Database links

Mature eca-miR-183

Accession MIMAT0012938
Description Equus caballus eca-miR-183 mature miRNA
Sequence 6 - UAUGGCACUGGUAGAAUUCACU - 27
Evidence not_experimental

References

  1. PubMed ID: 19406225
    In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
    "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
    "Genomics (2009) 94:125-131