miRBase entry: eca-mir-15b

Stem-loop eca-mir-15b


Accession
MI0012706
Description
Equus caballus eca-mir-15b precursor miRNA
Gene family
MIPF0000006; mir-15

Literature search
2 open access papers mention eca-mir-15b
(12 sentences)

Sequence

354 reads, 54 reads per million, 1 experiments
cugUAGCAGCACAUCAUGGUUUACAuacuacagucaagaugcgaaucauuauuugcugcucuag
(((.(((((((.((.(((((((.(((.((.......))))).))))))).)).))))))).)))

Structure
   U       C  C       A   a  ac 
cug AGCAGCA AU AUGGUUU CAu cu  a
||| ||||||| || ||||||| ||| ||  g
gau ucgucgu ua uacuaag gua ga  u
   c       u  u       c   -  ac 


Annotation confidence High
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Genome context
chr5: 15685189-15685252 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from eca-mir-15b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature eca-miR-15b

Accession MIMAT0012954
Description Equus caballus eca-miR-15b mature miRNA
Sequence 4 - UAGCAGCACAUCAUGGUUUACA - 25
Evidence not_experimental

References

  1. PubMed ID: 19406225
    In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
    "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
    "Genomics (2009) 94:125-131