Stem-loop sequence eca-mir-15b

Accession

MI0012706 (change log)

Description

Equus caballus miR-15b stem-loop

Gene family

MIPF0000006; mir-15

Literature search

2 open access papers mention eca-mir-15b
(12 sentences)

Stem-loop

      u       c  c      ua   a  ac 
5' cug agcagca au augguu  cau cu  a
   ||| ||||||| || ||||||  ||| ||  g
3' gau ucgucgu ua uacuaa  gua ga  u
      c       u  u      gc   -  ac 

Deep sequencing

587 reads, 0 reads per million, 2 experiments

Confidence

Annotation confidence: high

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Genome context

• Coordinates (EquCab2.0; GCF_000002305.2): chr5: 15685189-15685252 [+]
• Overlapping transcripts:

  sense

  ENSECAT00000028354 ; eca-mir-15b-201; exon 1

  ENSECAT00000024113 ; SMC4-201; intron 3

Clustered miRNAs

< 10kb from eca-mir-15b

• eca-mir-15b: chr5: 15685189-15685252 [+]
• eca-mir-16-1: chr5: 15685330-15685410 [+]

Database links

• EntrezGene:MIR15B
• miRBase Tracker:MI0012706

Mature sequence eca-miR-15b

• Accession: MIMAT0012954
• Sequence: 4 - uagcagcacaucaugguuuaca - 25
• Deep sequencing: 539 reads, 1 experiments
• Evidence: not experimental

References

1. PMID:19406225 "In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach" Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y Genomics. 94:125-131(2009).