miRBase entry: eca-mir-16-1

Stem-loop eca-mir-16-1


Accession
MI0012707
Description
Equus caballus eca-mir-16-1 precursor miRNA
Gene family
MIPF0000006; mir-15

Literature search
2 open access papers mention eca-mir-16-1
(3 sentences)

Sequence

23359 reads, 3536 reads per million, 1 experiments
guuccgcucUAGCAGCACGUAAAUAUUGGCGuagugaaauaaauauuaaacaccaauauuauugugcugcuuuagcguggc
(((.((((..(((((((((..((((((((.((.................)).))))))))..)))))))))..)))).)))

Structure
   c    cU         UA        C  agugaaa 
guu cgcu  AGCAGCACG  AAUAUUGG Gu       u
||| ||||  |||||||||  |||||||| ||       a
cgg gcga  ucgucgugu  uuauaacc ca       a
   u    uu         ua        a  aauuaua 


Annotation confidence Not enough data
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Genome context
chr5: 15685330-15685410 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from eca-mir-16-1
Name Accession Chromosome Start End Strand Confidence




Database links

Mature eca-miR-16

Accession MIMAT0012955
Description Equus caballus eca-miR-16 mature miRNA
Sequence 10 - UAGCAGCACGUAAAUAUUGGCG - 31
Evidence not_experimental

References

  1. PubMed ID: 19406225
    In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
    "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
    "Genomics (2009) 94:125-131