Stem-loop eca-mir-29c

Accession

MI0012716

Description

Equus caballus eca-mir-29c precursor miRNA

Gene family

MIPF0000009; mir-29

Literature search

2 open access papers mention eca-mir-29c
(3 sentences)

Sequence

435 reads, 66 reads per million, 1 experiments

aucucuuacacaggcugaccgauuucuccugguguucagagucuguuuuugucUAGCACCAUUUGAAAUCGGUUAugauguaggggga
..((((((((((...(((((((((((...(((((((.(((...........))))))))))...))))))))))))).))))))))..

Structure

au        -  ggc           ucc       c   gucu 
  cucuuaca ca   ugaccgauuuc   ugguguu aga    g
  |||||||| ||   |||||||||||   ||||||| |||    u
  ggggaugu gu   AUUGGCUAAAG   ACCACGA Ucu    u
ag        a  ---           UUU       -   guuu 

Annotation confidence Not enough data

Genome context

chr5: 30271715-30271802 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from eca-mir-29c

Mature eca-miR-29c

• Accession: MIMAT0012964
• Description: Equus caballus eca-miR-29c mature miRNA
• Sequence: 54 - UAGCACCAUUUGAAAUCGGUUA - 75
• Evidence: not_experimental

References

1. PubMed ID: 19406225
   In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
   "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
   "Genomics (2009) 94:125-131