Stem-loop eca-mir-148b

Accession

MI0012724

Description

Equus caballus eca-mir-148b precursor miRNA

Gene family

MIPF0000056; mir-148

Literature search

1 open access papers mention eca-mir-148b
(4 sentences)

Sequence

1450 reads, 219 reads per million, 1 experiments

agcauuugagguGAAGUUCUGUUAUACACUCAGGcuguggcucucugaaagUCAGUGCAUCACAGAACUUUGUcucgaaagcu
(((.((((((((((((((((((.((.((((..((((.............)))))))).)).)))))))))))))))))).)))

Structure

   a                  U  A    CA    guggc 
agc uuugagguGAAGUUCUGU AU CACU  GGcu     u
||| |||||||||||||||||| || ||||  ||||     c
ucg aagcucUGUUUCAAGACA UA GUGA  CUga     u
   a                  C  C    --    aaguc 

Annotation confidence High

Genome context

chr6: 71148022-71148104 [+]

Mature eca-miR-148b-5p

• Accession: MIMAT0012971
• Description: Equus caballus eca-miR-148b-5p mature miRNA
• Sequence: 13 - GAAGUUCUGUUAUACACUCAGG - 34
• Evidence: not_experimental

Mature eca-miR-148b-3p

• Accession: MIMAT0012972
• Description: Equus caballus eca-miR-148b-3p mature miRNA
• Sequence: 52 - UCAGUGCAUCACAGAACUUUGU - 73
• Evidence: not_experimental

References

1. PubMed ID: 19406225
   In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
   "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
   "Genomics (2009) 94:125-131