miRBase entry: eca-let-7a

Stem-loop eca-let-7a


Accession
MI0012731
Description
Equus caballus eca-let-7a precursor miRNA
Gene family
MIPF0000002; let-7

Literature search
6 open access papers mention eca-let-7a
(13 sentences)

Sequence

96526 reads, 14612 reads per million, 1 experiments
agguUGAGGUAGUAGGUUGUAUAGUUuagaauuacaucaagggagauaacuguacagccuccuagcuuuccu
(((..(((.(((.(((((((((((((.........(((......)))))))))))))))).))).))).)))

Structure
   uU   G   U             uagaauuac   aa 
agg  GAG UAG AGGUUGUAUAGUU         auc  g
|||  ||| ||| |||||||||||||         |||   
ucc  uuc auc uccgacaugucaa         uag  g
   -u   g   c             ---------   ag 


Annotation confidence Not enough data
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Genome context
chr7: 29543908-29543979 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from eca-let-7a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature eca-let-7a

Accession MIMAT0012979
Description Equus caballus eca-let-7a mature miRNA
Sequence 5 - UGAGGUAGUAGGUUGUAUAGUU - 26
Evidence not_experimental

References

  1. PubMed ID: 19406225
    In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
    "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
    "Genomics (2009) 94:125-131