Stem-loop sequence eca-mir-30d

Accession

MI0012758 (change log)

Description

Equus caballus miR-30d stem-loop

Gene family

MIPF0000005; mir-30

Literature search

4 open access papers mention eca-mir-30d
(7 sentences)

Stem-loop

   u  g  u         ccc           gug  ac 
5'  gu gu guaaacauc   gacuggaagcu   ag  a
    || || |||||||||   |||||||||||   ||   
3'  ca cg cguuuguag   cugacuuucga   uc  u
   -  g  u         --a           --a  gg 

Deep sequencing

41763 reads, 2.8e+03 reads per million, 2 experiments

Confidence

Annotation confidence: high

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Genome context

• Coordinates (EquCab2.0; GCF_000002305.2): chr9: 75212697-75212767 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from eca-mir-30d

• eca-mir-30d: chr9: 75212697-75212767 [-]
• eca-mir-30b: chr9: 75208370-75208427 [-]

Database links

• EntrezGene:MIR30D
• miRBase Tracker:MI0012758

Mature sequence eca-miR-30d

• Accession: MIMAT0013006
• Sequence: 7 - uguaaacauccccgacuggaag - 28
• Deep sequencing: 41359 reads, 1 experiments
• Evidence: not experimental

References

1. PMID:19406225 "In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach" Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y Genomics. 94:125-131(2009).