Stem-loop eca-let-7e

Accession

MI0012759

Description

Equus caballus eca-let-7e precursor miRNA

Literature search

19 open access papers mention eca-let-7e
(62 sentences)

Sequence

992360 reads, 2171.0 reads per million, 237 experiments

cccgggcUGAGGUAGGAGGUUGUAUAGUUgaggaggacacccacggagaucaCUAUACGGCCUCCUAGCUUUCCccagg
((.(((..(((.((((((((((((((((.((...(........).....)))))))))))))))))).)))..))).))

Structure

  c   cU   G                U  --gga gac 
cc ggg  GAG UAGGAGGUUGUAUAGU ga     g   a
|| |||  ||| |||||||||||||||| ||     |    
gg ccC  UUC AUCCUCCGGCAUAUCa cu     c   c
  a   CU   G                -  agagg acc 

Annotation confidence High

Genome context

10: 21666211-21666289 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from eca-let-7e

Mature eca-let-7e-5p

• Accession: MIMAT0013007
• Description: Equus caballus eca-let-7e-5p mature miRNA
• Sequence: 8 - UGAGGUAGGAGGUUGUAUAGUU - 29
• Evidence: not_experimental

Mature eca-let-7e-3p

• Accession: MIMAT0061098
• Description: Equus caballus eca-let-7e-3p mature miRNA
• Sequence: 53 - CUAUACGGCCUCCUAGCUUUCC - 74
• Evidence: not_experimental

References

1. PubMed ID: 19406225
   In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
   "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
   "Genomics (2009) 94:125-131