Stem-loop eca-let-7e

Accession

MI0012759

Description

Equus caballus eca-let-7e precursor miRNA

Gene family

MIPF0000002; let-7

Literature search

5 open access papers mention eca-let-7e
(8 sentences)

Sequence

6002 reads, 909 reads per million, 1 experiments

cccgggcUGAGGUAGGAGGUUGUAUAGUUgaggaggacacccacggagaucacuauacggccuccuagcuuuccccagg
((.(((..(((.((((((((((((((((.((...(........).....)))))))))))))))))).)))..))).))

Structure

  c   cU   G                U  --gga gac 
cc ggg  GAG UAGGAGGUUGUAUAGU ga     g   a
|| |||  ||| |||||||||||||||| ||     |    
gg ccc  uuc auccuccggcauauca cu     c   c
  a   cu   g                -  agagg acc 

Annotation confidence High

Genome context

chr10: 21371067-21371145 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from eca-let-7e

Mature eca-let-7e

• Accession: MIMAT0013007
• Description: Equus caballus eca-let-7e mature miRNA
• Sequence: 8 - UGAGGUAGGAGGUUGUAUAGUU - 29
• Evidence: not_experimental

References

1. PubMed ID: 19406225
   In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
   "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
   "Genomics (2009) 94:125-131