miRBase entry: eca-mir-371

Stem-loop eca-mir-371


Accession
MI0012764
Description
Equus caballus eca-mir-371 precursor miRNA
Gene family
MIPF0000068; mir-290


Sequence

5 reads, 1 reads per million, 1 experiments
ACUCAAACUGUGGGGGCACUuucugugcuacguagggAAGUGCCGCCAUUUUUUGAGUGU
(((((((..((((.((((((((((.(((...))))))))))))).))))..)))))))..

Structure
--       CU    G          g   u 
  ACUCAAA  GUGG GGCACUuucu ugc  
  |||||||  |||| |||||||||| ||| a
  UGAGUUU  UACC CCGUGAAggg aug  
UG       UU    G          -   c 


Annotation confidence Not enough data
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Genome context
chr10: 22831962-22832021 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from eca-mir-371
Name Accession Chromosome Start End Strand Confidence




Database links

Mature eca-miR-371-5p

Accession MIMAT0013013
Description Equus caballus eca-miR-371-5p mature miRNA
Sequence 1 - ACUCAAACUGUGGGGGCACU - 20
Evidence not_experimental

Mature eca-miR-371-3p

Accession MIMAT0013014
Description Equus caballus eca-miR-371-3p mature miRNA
Sequence 38 - AAGUGCCGCCAUUUUUUGAGUGU - 60
Evidence not_experimental

References

  1. PubMed ID: 19406225
    In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
    "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
    "Genomics (2009) 94:125-131