Stem-loop eca-mir-1180

Accession

MI0012769

Description

Equus caballus eca-mir-1180 precursor miRNA

Gene family

MIPF0000789; mir-1180

Sequence

84 reads, 13 reads per million, 1 experiments

gucugccuggcccacccagccgggaauagugcacgaguuugUUUCCGGCUCGAGUGGGUGUGUcggaggc
((((.((.(((.(((((((((((((((((.((....))))))))))))).....)))))).)))))))))

Structure

    g  u   c      -----           u  a 
gucu cc ggc caccca     gccgggaauag gc c
|||| || ||| ||||||     ||||||||||| ||  
cgga gg cUG GUGGGU     CGGCCUUUguu ug g
    -  -   U      GAGCU           -  a 

Annotation confidence Not enough data

Genome context

chr11: 59216504-59216573 [+]

Mature eca-miR-1180

• Accession: MIMAT0013020
• Description: Equus caballus eca-miR-1180 mature miRNA
• Sequence: 42 - UUUCCGGCUCGAGUGGGUGUGU - 63
• Evidence: not_experimental

References

1. PubMed ID: 19406225
   In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
   "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
   "Genomics (2009) 94:125-131