miRBase entry: eca-mir-144

Stem-loop eca-mir-144


Accession
MI0012772
Description
Equus caballus eca-mir-144 precursor miRNA
Gene family
MIPF0000093; mir-144

Literature search
1 open access papers mention eca-mir-144
(2 sentences)

Sequence

77 reads, 12 reads per million, 1 experiments
ggcugggauaucaucauauacuguaaguuugcgaugagacacUACAGUAUAGAUGAUGUACUaguc
((((((.((((((((.(((((((((.((((......))))..))))))))))))))))).))))))

Structure
      g        a         -a    gc 
ggcugg auaucauc uauacugua  guuu  g
|||||| |||||||| |||||||||  ||||   
cugaUC UGUAGUAG AUAUGACAU  caga  a
      A        -         ca    gu 


Annotation confidence High
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Genome context
chr11: 42750581-42750646 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from eca-mir-144
Name Accession Chromosome Start End Strand Confidence




Database links

Mature eca-miR-144

Accession MIMAT0013024
Description Equus caballus eca-miR-144 mature miRNA
Sequence 43 - UACAGUAUAGAUGAUGUACU - 62
Evidence not_experimental

References

  1. PubMed ID: 19406225
    In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
    "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
    "Genomics (2009) 94:125-131