miRBase entry: eca-mir-301a

Stem-loop eca-mir-301a


Accession
MI0012779
Description
Equus caballus eca-mir-301a precursor miRNA
Gene family
MIPF0000034; mir-130


Sequence

1654 reads, 250 reads per million, 1 experiments
acugcuaacgaaugcucugacuuuauugcacuacuguacuuuacagcuagCAGUGCAAUAGUAUUGUCAAAGCaucugaaagcagg
.(((((..((.(((((.((((.((((((((((.((((........)).)).))))))))))....)))).))))).))..))))).

Structure
a     aa  a     c    ---u          a  -  acu 
 cugcu  cg augcu ugac    uuauugcacu cu gu   u
 |||||  || ||||| ||||    |||||||||| || ||    
 gacga  gu uaCGA ACUG    GAUAACGUGA ga cg   u
g     aa  c     A    UUAU          C  u  aca 


Annotation confidence Not enough data
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Genome context
chr11: 33292426-33292511 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from eca-mir-301a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature eca-miR-301a

Accession MIMAT0013032
Description Equus caballus eca-miR-301a mature miRNA
Sequence 51 - CAGUGCAAUAGUAUUGUCAAAGC - 73
Evidence not_experimental

References

  1. PubMed ID: 19406225
    In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
    "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
    "Genomics (2009) 94:125-131