Stem-loop sequence eca-mir-451

Accession

MI0012785 (change log)

Description

Equus caballus miR-451 stem-loop

Gene family

MIPF0000148; mir-451

Literature search

1 open access papers mention eca-mir-451
(1 sentences)

Stem-loop

   c     a   u    ga                 u 
5'  uuggg aug cgag  aaccguuaccauuacug g
    ||||| ||| ||||  |||||||||||||||||  
3'  gaccc ugu guuc  uuggcaaugguaaugau u
   a     a   c    uc                 u 

Deep sequencing

3049 reads, 200 reads per million, 2 experiments

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (EquCab2.0; GCF_000002305.2): chr11: 42750408-42750479 [-]
• Overlapping transcripts:

  sense

  ENSECAT00000012832 ; FLOT2-201; intron 10

Clustered miRNAs

< 10kb from eca-mir-451

• eca-mir-144: chr11: 42750581-42750646 [-]
• eca-mir-451: chr11: 42750408-42750479 [-]

Database links

• EntrezGene:MIR451
• miRBase Tracker:MI0012785

Mature sequence eca-miR-451

• Accession: MIMAT0013041
• Sequence: 17 - aaaccguuaccauuacuguguu - 38
• Deep sequencing: 3049 reads, 1 experiments
• Evidence: not experimental

References

1. PMID:19406225 "In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach" Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y Genomics. 94:125-131(2009).