miRBase entry: eca-mir-130a

Stem-loop eca-mir-130a


Accession
MI0012790
Description
Equus caballus eca-mir-130a precursor miRNA
Gene family
MIPF0000034; mir-130

Literature search
1 open access papers mention eca-mir-130a
(1 sentences)

Sequence

3048 reads, 461 reads per million, 1 experiments
gagcucuuuucacauugugcuacugucugcaccuaccacuagCAGUGCAAUGUUAAAAGGGCAU
..((((((((.((((((((((.(((..............))).)))))))))).))))))))..

Structure
ga        c          a   ucugca 
  gcucuuuu acauugugcu cug      c
  |||||||| |||||||||| |||       
  CGGGAAAA UGUAACGUGA gau      c
UA        U          C   caccau 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
chr12: 17657890-17657953 [+]

Database links

Mature eca-miR-130a

Accession MIMAT0013047
Description Equus caballus eca-miR-130a mature miRNA
Sequence 43 - CAGUGCAAUGUUAAAAGGGCAU - 64
Evidence not_experimental

References

  1. PubMed ID: 19406225
    In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
    "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
    "Genomics (2009) 94:125-131