miRBase entry: eca-mir-193b

Stem-loop eca-mir-193b


Accession
MI0012800
Description
Equus caballus eca-mir-193b precursor miRNA
Gene family
MIPF0000082; mir-193

Literature search
2 open access papers mention eca-mir-193b
(2 sentences)

Sequence

224 reads, 34 reads per million, 1 experiments
cagaaucgggguuuugagggcgagaugaguuuauguuuuauccAACUGGCCCACAAAGUCCCGCUuuug
(((((.((((((((((.((((.((.((.((.........)).)).)).)))).)))))))))).)))))

Structure
     u          a    g  a  a  uua 
cagaa cgggguuuug gggc ag ug gu   u
||||| |||||||||| |||| || || ||   g
guuuU GCCCUGAAAC CCCG UC Ac ua   u
     C          A    G  A  c  uuu 


Annotation confidence Not enough data
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Genome context
chr13: 30687480-30687548 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from eca-mir-193b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature eca-miR-193b

Accession MIMAT0013056
Description Equus caballus eca-miR-193b mature miRNA
Sequence 44 - AACUGGCCCACAAAGUCCCGCU - 65
Evidence not_experimental

References

  1. PubMed ID: 19406225
    In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
    "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
    "Genomics (2009) 94:125-131