miRBase entry: eca-mir-1271a

Stem-loop eca-mir-1271a


Accession
MI0012806
Description
Equus caballus eca-mir-1271a precursor miRNA
Gene family
MIPF0000483; mir-1271


Sequence

1118 reads, 169 reads per million, 1 experiments
CUUGGCACCUCGUAAGCACUCAguaaauacuuguugagugccugcugugugccaggc
(((((((((..(((.(((((((((((....))))))))))).))).).)))))))).

Structure
-        - UC   A           a 
 CUUGGCAC C  GUA GCACUCAguaa u
 |||||||| |  ||| |||||||||||  
 ggaccgug g  cgu cgugaguuguu a
c        u -u   c           c 


Annotation confidence Not enough data
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Genome context
chr14: 5745062-5745118 [-]

Database links

Mature eca-miR-1271a

Accession MIMAT0013062
Description Equus caballus eca-miR-1271a mature miRNA
Sequence 1 - CUUGGCACCUCGUAAGCACUCA - 22
Evidence not_experimental

References

  1. PubMed ID: 19406225
    In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
    "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
    "Genomics (2009) 94:125-131