miRBase entry: eca-mir-216b

Stem-loop eca-mir-216b


Accession
MI0012818
Description
Equus caballus eca-mir-216b precursor miRNA
Gene family
MIPF0000054; mir-216


Sequence

8 reads, 1 reads per million, 1 experiments
guggcagacuggaAAAUCUCUGCAGGCAAAUGUGAugucacuaaagaaaucacacacuuacccguagagauucuacagucugacau
(((.(((((((...(((((((((.((.((.((((((.((......)).))))))...)).)).)))))))))...))))))).)))

Structure
   g       gaA         A  C  --A      g  ac 
gug cagacug   AAUCUCUGC GG AA   UGUGAu uc  u
||| |||||||   ||||||||| || ||   |||||| ||   
uac gucugac   uuagagaug cc uu   acacua ag  a
   a       auc         c  a  cac      a  aa 


Annotation confidence Not enough data
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Genome context
chr15: 44358815-44358900 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from eca-mir-216b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature eca-miR-216b

Accession MIMAT0013073
Description Equus caballus eca-miR-216b mature miRNA
Sequence 14 - AAAUCUCUGCAGGCAAAUGUGA - 35
Evidence not_experimental

References

  1. PubMed ID: 19406225
    In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
    "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
    "Genomics (2009) 94:125-131