Stem-loop eca-mir-138-2

Accession

MI0012824

Description

Equus caballus eca-mir-138-2 precursor miRNA

Gene family

MIPF0000075; mir-138

Literature search

1 open access papers mention eca-mir-138-2
(2 sentences)

Sequence

15 reads, 2 reads per million, 1 experiments

AGCUGGUGUUGUGAAUCAGGCCGuugccaaucagagaacggcuacuucacaacaccagg
..(((((((((((((...(((((((..(.....)..)))))))..))))))))))))).

Structure

AG             UCA       gc a 
  CUGGUGUUGUGAA   GGCCGuu  c a
  |||||||||||||   |||||||  | u
  gaccacaacacuu   ucggcaa  g c
-g             -ca       ga a 

Annotation confidence Not enough data

Genome context

chr16: 42248842-42248900 [-]

Mature eca-miR-138

• Accession: MIMAT0012925
• Description: Equus caballus eca-miR-138 mature miRNA
• Sequence: 1 - AGCUGGUGUUGUGAAUCAGGCCG - 23
• Evidence: not_experimental

References

1. PubMed ID: 19406225
   In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
   "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
   "Genomics (2009) 94:125-131