Stem-loop sequence eca-mir-191a

Accession

MI0012825 (change log)

Previous IDs

eca-mir-191

Description

Equus caballus miR-191 stem-loop

Gene family

MIPF0000194; mir-191

Literature search

5 open access papers mention eca-mir-191a
(8 sentences)

Stem-loop

         c          c  aa       uu  -  c 
5' agcggg aacggaaucc aa  gcagcug  gu cu c
   |||||| |||||||||| ||  |||||||  || ||  
3' ucgucc uugcuuuagg uu  cgucgac  ua ga a
         c          -  cg       cu  c  g 

Deep sequencing

107418 reads, 7.7e+03 reads per million, 2 experiments

Confidence

Annotation confidence: high

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Genome context

• Coordinates (EquCab2.0; GCF_000002305.2): chr16: 38001159-38001232 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from eca-mir-191a

• eca-mir-191b: chr16: 38001138-38001256 [-]
• eca-mir-191a: chr16: 38001159-38001232 [+]
• eca-mir-425: chr16: 38001590-38001732 [+]

Database links

• EntrezGene:MIR191
• miRBase Tracker:MI0012825

Mature sequence eca-miR-191a

• Accession: MIMAT0013079
• Previous IDs: eca-miR-191
• Sequence: 7 - caacggaaucccaaaagcagcug - 29
• Deep sequencing: 107310 reads, 1 experiments
• Evidence: not experimental

References

1. PMID:19406225 "In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach" Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y Genomics. 94:125-131(2009).