Stem-loop eca-mir-17

Accession

MI0012831

Description

Equus caballus eca-mir-17 precursor miRNA

Gene family

MIPF0000001; mir-17

Literature search

6 open access papers mention eca-mir-17
(8 sentences)

Sequence

992 reads, 150 reads per million, 1 experiments

CAAAGUGCUUACAGUGCAGGUAGugauauaugugcaucuacugcagugaaggcacuugu
..((((((((.((.(((((.(((((.........)).)))))))).)).))))))))..

Structure

CA        A  G     G   -  aua 
  AAGUGCUU CA UGCAG UAG ug   u
  |||||||| || ||||| ||| ||   a
  uucacgga gu acguc auc ac   u
ug        a  g     -   u  gug 

Annotation confidence Not enough data

Genome context

chr17: 61792416-61792474 [+]

Clustered miRNAs

5 other miRNAs are < 10 kb from eca-mir-17

Mature eca-miR-17

• Accession: MIMAT0013084
• Description: Equus caballus eca-miR-17 mature miRNA
• Sequence: 1 - CAAAGUGCUUACAGUGCAGGUAG - 23
• Evidence: not_experimental

References

1. PubMed ID: 19406225
   In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
   "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
   "Genomics (2009) 94:125-131