Stem-loop eca-mir-18a

Accession

MI0012832

Description

Equus caballus eca-mir-18a precursor miRNA

Gene family

MIPF0000001; mir-17

Literature search

4 open access papers mention eca-mir-18a
(5 sentences)

Sequence

58 reads, 9 reads per million, 1 experiments

UAAGGUGCAUCUAGUGCAGAUAGugaaguagauuagcaucuacugcccuaagugcuccuuc
.((((.((((.(((.((((.(((((..(.....)..)).))))))).))).)))).)))).

Structure

U    U    C   U    A   -  aa u 
 AAGG GCAU UAG GCAG UAG ug  g a
 |||| |||| ||| |||| ||| ||  | g
 uucc cgug auc cguc auc ac  u a
c    u    a   c    -   u  ga u 

Annotation confidence Not enough data

Genome context

chr17: 61792556-61792616 [+]

Clustered miRNAs

5 other miRNAs are < 10 kb from eca-mir-18a

Mature eca-miR-18a

• Accession: MIMAT0013085
• Description: Equus caballus eca-miR-18a mature miRNA
• Sequence: 1 - UAAGGUGCAUCUAGUGCAGAUAG - 23
• Evidence: not_experimental

References

1. PubMed ID: 19406225
   In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
   "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
   "Genomics (2009) 94:125-131