miRBase entry: eca-mir-92a

Stem-loop eca-mir-92a


Accession
MI0012836
Description
Equus caballus eca-mir-92a precursor miRNA
Gene family
MIPF0000013; mir-25

Literature search
5 open access papers mention eca-mir-92a
(10 sentences)

Sequence

25951 reads, 3928 reads per million, 1 experiments
acagguugggaucgguugcaaugcuguguuucuguauggUAUUGCACUUGUCCCGGCCUGU
((((((((((((.(((.(((((((((((......)))))))))))))).))))))))))))

Structure
            c   u           uu 
acagguugggau ggu gcaaugcugug  u
|||||||||||| ||| |||||||||||   
UGUCCGGCCCUG UCA CGUUAUgguau  c
            U   -           gu 


Annotation confidence Not enough data
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Genome context
chr17: 61793120-61793180 [+]
Clustered miRNAs
5 other miRNAs are < 10 kb from eca-mir-92a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature eca-miR-92a

Accession MIMAT0013089
Description Equus caballus eca-miR-92a mature miRNA
Sequence 40 - UAUUGCACUUGUCCCGGCCUGU - 61
Evidence not_experimental

References

  1. PubMed ID: 19406225
    In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
    "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
    "Genomics (2009) 94:125-131