Stem-loop sequence eca-mir-92a

Accession

MI0012836 (change log)

Description

Equus caballus miR-92a stem-loop

Gene family

MIPF0000013; mir-25

Literature search

5 open access papers mention eca-mir-92a
(10 sentences)

Stem-loop

               c   u           uu 
5' acagguugggau ggu gcaaugcugug  u
   |||||||||||| ||| |||||||||||   
3' uguccggcccug uca cguuaugguau  c
               u   -           gu 

Deep sequencing

32068 reads, 2.25e+03 reads per million, 2 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (EquCab2.0; GCF_000002305.2): chr17: 61793120-61793180 [+]
• Overlapping transcripts:

  sense

  ENSECAT00000027951 ; eca-mir-92a-201; exon 1

Clustered miRNAs

< 10kb from eca-mir-92a

• eca-mir-17: chr17: 61792416-61792474 [+]
• eca-mir-18a: chr17: 61792556-61792616 [+]
• eca-mir-19a: chr17: 61792692-61792773 [+]
• eca-mir-20a: chr17: 61792863-61792933 [+]
• eca-mir-19b: chr17: 61793002-61793065 [+]
• eca-mir-92a: chr17: 61793120-61793180 [+]

Database links

• EntrezGene:MIR92A
• miRBase Tracker:MI0012836

Mature sequence eca-miR-92a

• Accession: MIMAT0013089
• Sequence: 40 - uauugcacuugucccggccugu - 61
• Deep sequencing: 378363 reads, 1 experiments
• Evidence: not experimental

References

1. PMID:19406225 "In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach" Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y Genomics. 94:125-131(2009).