Stem-loop sequence eca-mir-103

Accession

MI0012854 (change log)

Description

Equus caballus miR-103 stem-loop

Gene family

MIPF0000024; mir-103

Literature search

3 open access papers mention eca-mir-103
(11 sentences)

Stem-loop

   uc  g      --   u  u           ----    ua 
5'   gu cuuuca  gcu cu uacagugcugc    cuug  g
     || ||||||  ||| || |||||||||||    ||||  c
3'   ca gaaagu  cgg ga auguuacgacg    ggac  a
   ac  a      au   -  c           aacu    uu 

Deep sequencing

8486 reads, 400 reads per million, 2 experiments

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (EquCab2.0; GCF_000002305.2): chr22: 19043286-19043363 [-]
• Overlapping transcripts:

  sense

  ENSECAT00000027419 ; eca-mir-103-201; exon 1

  ENSECAT00000018679 ; PANK2-201; intron 5

Database links

• EntrezGene:MIR103
• miRBase Tracker:MI0012854

Mature sequence eca-miR-103

• Accession: MIMAT0013105
• Sequence: 48 - agcagcauuguacagggcuauga - 70
• Deep sequencing: 8478 reads, 1 experiments
• Evidence: not experimental

References

1. PMID:19406225 "In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach" Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y Genomics. 94:125-131(2009).