Stem-loop sequence eca-let-7f

Accession

MI0012860 (change log)

Description

Equus caballus let-7f stem-loop

Gene family

MIPF0000002; let-7

Literature search

6 open access papers mention eca-let-7f
(13 sentences)

Stem-loop

       a ug                      ---------       u 
5' ucgg g  agguaguagauuguauaguugu         gggguag g
   |||| |  ||||||||||||||||||||||         ||||||| a
3' aguc c  uccguuaucuaacauaucaaua         ucccauu u
       - cu                      gaggacuug       u 

Deep sequencing

188237 reads, 1.38e+04 reads per million, 2 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (EquCab2.0; GCF_000002305.2): chr23: 54150758-54150844 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from eca-let-7f

• eca-let-7f: chr23: 54150758-54150844 [-]
• eca-let-7d: chr23: 54148818-54148904 [-]

Database links

• EntrezGene:MIRLET7F
• miRBase Tracker:MI0012860

Mature sequence eca-let-7f

• Accession: MIMAT0013111
• Sequence: 7 - ugagguaguagauuguauaguu - 28
• Deep sequencing: 188200 reads, 1 experiments
• Evidence: not experimental

References

1. PMID:19406225 "In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach" Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y Genomics. 94:125-131(2009).