Stem-loop eca-mir-1197

Accession

MI0012875

Description

Equus caballus eca-mir-1197 precursor miRNA

Gene family

MIPF0000126; mir-379

Sequence

20 reads, 3 reads per million, 1 experiments

gggagagaggcugggucagcgucacuucaugguauuugaagaugcgguugaccaugcuguguacgcuuuauuuaugacgUAGGACACAUGGUCUACUUCUccucaauaucacaucucgcc
.((((.((.((((...)))).)).)))).(((((((.((.((.(.(((.(((((((.(((.(((((.........).))))..)))))))))).))).))).))))))))).........

Structure

gggagagaggcugggucagcgucacuuca       u  a  u c   u       c   -g    - uuu 
                             ugguauu ga ga g ggu gaccaug ugu  uacg c   a
                             ||||||| || || | ||| ||||||| |||  |||| |   u
                             acuauaa cu cU C UCA CUGGUAC ACA  AUgc g   u
--------------------ccgcucuac       -  c  - U   U       -   GG    a uau 

Annotation confidence Not enough data

Genome context

chr24: 42898113-42898232 [+]

Clustered miRNAs

13 other miRNAs are < 10 kb from eca-mir-1197

Mature eca-miR-1197

• Accession: MIMAT0013125
• Description: Equus caballus eca-miR-1197 mature miRNA
• Sequence: 80 - UAGGACACAUGGUCUACUUCU - 100
• Evidence: not_experimental

References

1. PubMed ID: 19406225
   In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
   "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
   "Genomics (2009) 94:125-131