Stem-loop eca-mir-127

Accession

MI0012876

Description

Equus caballus eca-mir-127 precursor miRNA

Gene family

MIPF0000080; mir-127

Literature search

2 open access papers mention eca-mir-127
(93 sentences)

Sequence

118831 reads, 17988 reads per million, 1 experiments

ccagccugcugaagcucagagggcucugauucagaaagaucaUCGGAUCCGUCUGAGCUUGGCUggucgg
((((((.....(((((((((.((.((((((((.....))..)))))).)).)))))))))))))))....

Structure

----      ugcug         g  c      --  a 
    ccagcc     aagcucaga gg ucugau  uc g
    ||||||     ||||||||| || ||||||  || a
    ggUCGG     UUCGAGUCU CC AGGCUa  ag a
ggcu      -----         G  U      cu  a 

Annotation confidence High

Genome context

chr24: 42747005-42747074 [+]

Clustered miRNAs

5 other miRNAs are < 10 kb from eca-mir-127

Mature eca-miR-127

• Accession: MIMAT0013126
• Description: Equus caballus eca-miR-127 mature miRNA
• Sequence: 43 - UCGGAUCCGUCUGAGCUUGGCU - 64
• Evidence: not_experimental

References

1. PubMed ID: 19406225
   In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
   "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
   "Genomics (2009) 94:125-131