Stem-loop eca-mir-127

Accession

MI0012876

Description

Equus caballus eca-mir-127 precursor miRNA

Literature search

7 open access papers mention eca-mir-127
(142 sentences)

Sequence

2594223 reads, 3683.0 reads per million, 226 experiments

ccagccugCUGAAGCUCAGAGGGCUCUGAUucagaaagaucaUCGGAUCCGUCUGAGCUUGGCUggucgg
((((((.....(((((((((.((.((((((((.....))..)))))).)).)))))))))))))))....

Structure

----      ugCUG         G  C      --  a 
    ccagcc     AAGCUCAGA GG UCUGAU  uc g
    ||||||     ||||||||| || ||||||  || a
    ggUCGG     UUCGAGUCU CC AGGCUa  ag a
ggcu      -----         G  U      cu  a 

Annotation confidence High

Genome context

24: 43185821-43185890 [+]

Clustered miRNAs

5 other miRNAs are < 10 kb from eca-mir-127

Mature eca-miR-127-5p

• Accession: MIMAT0061111
• Description: Equus caballus eca-miR-127-5p mature miRNA
• Sequence: 9 - CUGAAGCUCAGAGGGCUCUGAU - 30
• Evidence: not_experimental

Mature eca-miR-127-3p

• Accession: MIMAT0013126
• Description: Equus caballus eca-miR-127-3p mature miRNA
• Sequence: 43 - UCGGAUCCGUCUGAGCUUGGCU - 64
• Evidence: not_experimental

References

1. PubMed ID: 19406225
   In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
   "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
   "Genomics (2009) 94:125-131