miRBase entry: eca-mir-136

Stem-loop eca-mir-136


Accession
MI0012878
Description
Equus caballus eca-mir-136 precursor miRNA
Gene family
MIPF0000099; mir-136


Sequence

8782 reads, 1329 reads per million, 1 experiments
gaggACUCCAUUUGUUUUGAUGAUGGauucuuacgcuccaucaucgucucaaaugagucuuc
((((((((.(((((...((((((((((.........))))))))))...)))))))))))))

Structure
        C     UUU          uuc 
gaggACUC AUUUG   UGAUGAUGGa   u
|||||||| |||||   ||||||||||   u
cuucugag uaaac   gcuacuaccu   a
        -     ucu          cgc 


Annotation confidence High
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Genome context
chr24: 42748685-42748746 [+]
Clustered miRNAs
5 other miRNAs are < 10 kb from eca-mir-136
Name Accession Chromosome Start End Strand Confidence




Database links

Mature eca-miR-136

Accession MIMAT0013128
Description Equus caballus eca-miR-136 mature miRNA
Sequence 5 - ACUCCAUUUGUUUUGAUGAUGG - 26
Evidence not_experimental

References

  1. PubMed ID: 19406225
    In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
    "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
    "Genomics (2009) 94:125-131