Stem-loop eca-mir-136

Accession

MI0012878

Description

Equus caballus eca-mir-136 precursor miRNA

Sequence

8782 reads, 1329 reads per million, 1 experiments

gaggACUCCAUUUGUUUUGAUGAUGGauucuuacgcuccaucaucgucucaaaugagucuuc
((((((((.(((((...((((((((((.........))))))))))...)))))))))))))

Structure

        C     UUU          uuc 
gaggACUC AUUUG   UGAUGAUGGa   u
|||||||| |||||   ||||||||||   u
cuucugag uaaac   gcuacuaccu   a
        -     ucu          cgc 

Annotation confidence Medium

Genome context

chr24: 42748685-42748746 [+]

Clustered miRNAs

5 other miRNAs are < 10 kb from eca-mir-136

Mature eca-miR-136

• Accession: MIMAT0013128
• Description: Equus caballus eca-miR-136 mature miRNA
• Sequence: 5 - ACUCCAUUUGUUUUGAUGAUGG - 26
• Evidence: not_experimental

References

1. PubMed ID: 19406225
   In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
   "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
   "Genomics (2009) 94:125-131