miRBase entry: eca-mir-299

Stem-loop eca-mir-299


Accession
MI0012880
Description
Equus caballus eca-mir-299 precursor miRNA
Gene family
MIPF0000186; mir-299

Literature search
1 open access papers mention eca-mir-299
(1 sentences)

Sequence

568 reads, 86 reads per million, 1 experiments
aagaaaugguuuaccgucccacauacauuuugaguaugUAUGUGGGAUGGUAAACCGCUUcuu
(((((.((((((((((((((((((((((.......)))))))))))))))))))))).)))))

Structure
     a                      uu 
aagaa ugguuuaccgucccacauacau  u
||||| ||||||||||||||||||||||  g
uucUU GCCAAAUGGUAGGGUGUAUgua  a
     C                      ug 


Annotation confidence High
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Genome context
chr24: 42896363-42896425 [+]
Clustered miRNAs
12 other miRNAs are < 10 kb from eca-mir-299
Name Accession Chromosome Start End Strand Confidence




Database links

Mature eca-miR-299

Accession MIMAT0013130
Description Equus caballus eca-miR-299 mature miRNA
Sequence 39 - UAUGUGGGAUGGUAAACCGCUU - 60
Evidence not_experimental

References

  1. PubMed ID: 19406225
    In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
    "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
    "Genomics (2009) 94:125-131