miRBase entry: eca-mir-329a

Stem-loop eca-mir-329a


Accession
MI0012882
Description
Equus caballus eca-mir-329a precursor miRNA
Gene family
MIPF0000110; mir-329


Sequence

15 reads, 2 reads per million, 1 experiments
guguuaaucagugguaccugaagagagguuuucuggguuucuguuucuuuaaugaagaugaAACACACCUAGUUAACCUCUUUuccaguaucagaucc
......(((..((((((..(((((((((((..((((((...((((((.((......)).)))))).))))))..)))))))))))..)))))))))..

Structure
guguua   ag      cu           uu      uuc      u  aa 
      auc  ugguac  gaagagagguu  cugggu   uguuuc uu  u
      |||  ||||||  |||||||||||  ||||||   |||||| ||   
      uag  acuaug  cuUUUCUCCAA  GAUCCA   ACAAag ag  g
----cc   --      ac           UU      --C      u  aa 


Annotation confidence Not enough data
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Genome context
chr24: 42899352-42899449 [+]
Clustered miRNAs
13 other miRNAs are < 10 kb from eca-mir-329a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature eca-miR-329a

Accession MIMAT0013133
Description Equus caballus eca-miR-329a mature miRNA
Sequence 62 - AACACACCUAGUUAACCUCUUU - 83
Evidence not_experimental

References

  1. PubMed ID: 19406225
    In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
    "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
    "Genomics (2009) 94:125-131