Stem-loop sequence eca-mir-337

Accession

MI0012883 (change log)

Description

Equus caballus miR-337 stem-loop

Gene family

MIPF0000195; mir-337

Stem-loop

   guagucaguag    -        -  c   u  a  c        augcg 
5'            gugg ggggugag aa ggc uc ua aggagcug     c
              |||| |||||||| || ||| || || ||||||||     a
3'            cacu ccccacuc uu ccg ag gu uccucgac     g
   -----------    u        c  u   u  a  a        ccauu 

Deep sequencing

20 reads, 0 reads per million, 2 experiments

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (EquCab2.0; GCF_000002305.2): chr24: 42738909-42739000 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from eca-mir-337

• eca-mir-493b: chr24: 42729572-42729660 [+]
• eca-mir-337: chr24: 42738909-42739000 [+]
• eca-mir-431: chr24: 42745020-42745108 [+]
• eca-mir-433: chr24: 42745895-42746018 [+]
• eca-mir-127: chr24: 42747005-42747074 [+]
• eca-mir-432: chr24: 42748485-42748573 [+]
• eca-mir-136: chr24: 42748685-42748746 [+]

Database links

• EntrezGene:MIR337
• miRBase Tracker:MI0012883

Mature sequence eca-miR-337-5p

• Accession: MIMAT0013134
• Sequence: 23 - gaacggcuucauacaggagcu - 43
• Deep sequencing: 10 reads, 1 experiments
• Evidence: not experimental

Mature sequence eca-miR-337-3p

• Accession: MIMAT0013135
• Sequence: 61 - cuccuaugagaugccuuuccuc - 82
• Deep sequencing: 10 reads, 1 experiments
• Evidence: not experimental

References

1. PMID:19406225 "In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach" Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y Genomics. 94:125-131(2009).