Stem-loop eca-mir-345

Accession

MI0012885

Description

Equus caballus eca-mir-345 precursor miRNA

Gene family

MIPF0000189; mir-345

Sequence

61 reads, 9 reads per million, 1 experiments

acccaaccccaggucuGCUGACUCCUAGUCCAGUGCUCgugauggcuagugggcCCUGAACUAGGGGUCUGGAGGCcuggguuugaauaucgccag
...(((.(((((((((.(.((((((((((.(((.((((((........)))))).))).)))))))))).).))))))))).)))...........

Structure

--------acc   c         G U          C   U      gau 
           caa cccaggucu C GACUCCUAGU CAG GCUCgu   g
           ||| ||||||||| | |||||||||| ||| ||||||    
           guu gggucCGGA G CUGGGGAUCA GUC cgggug   g
gaccgcuauaa   u         G U          A   C      auc 

Annotation confidence Not enough data

Genome context

chr24: 42227988-42228083 [+]

Mature eca-miR-345-5p

• Accession: MIMAT0013138
• Description: Equus caballus eca-miR-345-5p mature miRNA
• Sequence: 17 - GCUGACUCCUAGUCCAGUGCUC - 38
• Evidence: not_experimental

Mature eca-miR-345-3p

• Accession: MIMAT0013139
• Description: Equus caballus eca-miR-345-3p mature miRNA
• Sequence: 55 - CCUGAACUAGGGGUCUGGAGGC - 76
• Evidence: not_experimental

References

1. PubMed ID: 19406225
   In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
   "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
   "Genomics (2009) 94:125-131