miRBase entry: eca-mir-382

Stem-loop eca-mir-382


Accession
MI0012895
Description
Equus caballus eca-mir-382 precursor miRNA
Gene family
MIPF0000018; mir-154


Sequence

114 reads, 17 reads per million, 1 experiments
uacuugaagaGAAGUUGUUCGUGGUGGAUUCGcuuuacuuaugacgaaucauucacggacaacacuuuuuucagua
((((.(((((((.(((((((((((..(((((((.........).))))))..)))))))))))..)))))))))))

Structure
    u       -A           UG      - uuu 
uacu gaagaGA  GUUGUUCGUGG  GAUUCG c   a
|||| |||||||  |||||||||||  |||||| |   c
auga cuuuuuu  caacaggcacu  cuaagc g   u
    -       ca           ua      a uau 


Annotation confidence High
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Genome context
chr24: 42924862-42924937 [+]
Clustered miRNAs
15 other miRNAs are < 10 kb from eca-mir-382
Name Accession Chromosome Start End Strand Confidence




Database links

Mature eca-miR-382

Accession MIMAT0013150
Description Equus caballus eca-miR-382 mature miRNA
Sequence 11 - GAAGUUGUUCGUGGUGGAUUCG - 32
Evidence not_experimental

References

  1. PubMed ID: 19406225
    In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
    "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
    "Genomics (2009) 94:125-131