miRBase entry: eca-mir-493b

Stem-loop eca-mir-493b


Accession
MI0012906
Description
Equus caballus eca-mir-493b precursor miRNA
Gene family
MIPF0000230; mir-493

Literature search
1 open access papers mention eca-mir-493b
(2 sentences)

Sequence

302 reads, 46 reads per million, 1 experiments
cuggccuccagggccuuguacaugguaggcuuucauucauucguuugcacauucggUGAAGGUCUUCCGUGUGCCAGGcucugugccag
(((((...((((((((.((((((((.(((((((((((.................))))))))))).)))))))).)))))))).)))))

Structure
     cuc        u        u           cauucgu 
cuggc   cagggccu guacaugg aggcuuucauu       u
|||||   |||||||| |||||||| |||||||||||       u
gaccg   gucucGGA CGUGUGCC UCUGGAAGUgg       g
     --u        C        U           cuuacac 


Annotation confidence Not enough data
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Genome context
chr24: 42729572-42729660 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from eca-mir-493b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature eca-miR-493b

Accession MIMAT0013163
Description Equus caballus eca-miR-493b mature miRNA
Sequence 57 - UGAAGGUCUUCCGUGUGCCAGG - 78
Evidence not_experimental

References

  1. PubMed ID: 19406225
    In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
    "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
    "Genomics (2009) 94:125-131