miRBase entry: eca-mir-496

Stem-loop eca-mir-496


Accession
MI0012909
Description
Equus caballus eca-mir-496 precursor miRNA
Gene family
MIPF0000018; mir-154


Sequence

21 reads, 3 reads per million, 1 experiments
acccuagccagguacucgaauggagguuguccaugguguguucauuuuauuuaugaUGAGUAUUACAUGGCCAAUCUCcuuucaguacuaaauucuucuuggg
.(((.((...((((((.(((.((((((((.(((((..(((((((((........)))))))))..))))).)))))))).)))))))))........)).)))

Structure
a   u  -----cca      c   u        u     gu         uua 
 ccc ag        gguacu gaa ggagguug ccaug  guguucauu   u
 ||| ||        |||||| ||| |||||||| |||||  |||||||||    
 ggg uc        ucauga cuu cCUCUAAC GGUAC  UAUGAGUag   u
-   u  uucuuaaa      -   u        C     AU         uau 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
chr24: 42930990-42931092 [+]
Clustered miRNAs
14 other miRNAs are < 10 kb from eca-mir-496
Name Accession Chromosome Start End Strand Confidence




Database links

Mature eca-miR-496

Accession MIMAT0013166
Description Equus caballus eca-miR-496 mature miRNA
Sequence 57 - UGAGUAUUACAUGGCCAAUCUC - 78
Evidence not_experimental

References

  1. PubMed ID: 19406225
    In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
    "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
    "Genomics (2009) 94:125-131