Stem-loop eca-mir-539

Accession

MI0012910

Description

Equus caballus eca-mir-539 precursor miRNA

Gene family

MIPF0000018; mir-154

Sequence

465 reads, 70 reads per million, 1 experiments

auacuugaGGAGAAAUUAUCCUUGCUGUGUucgcuuuauuugugaugaaucauacaaggacaauuucuuuuugaguau
(((((((((((((((((.((((((.(((((((((.........).)))).)))))))))).)))))))))))))))))

Structure

                 A      C    -    - uuu 
auacuugaGGAGAAAUU UCCUUG UGUG Uucg c   a
||||||||||||||||| |||||| |||| |||| |   u
uaugaguuuuucuuuaa aggaac auac aagu g   u
                 c      -    u    a ugu 

Annotation confidence Not enough data

Genome context

chr24: 42917365-42917442 [+]

Clustered miRNAs

15 other miRNAs are < 10 kb from eca-mir-539

Mature eca-miR-539

• Accession: MIMAT0013167
• Description: Equus caballus eca-miR-539 mature miRNA
• Sequence: 9 - GGAGAAAUUAUCCUUGCUGUGU - 30
• Evidence: not_experimental

References

1. PubMed ID: 19406225
   In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
   "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
   "Genomics (2009) 94:125-131