miRBase entry: eca-mir-544-2

Stem-loop eca-mir-544-2


Accession
MI0012913
Description
Equus caballus eca-mir-544-2 precursor miRNA
Gene family
MIPF0000436; mir-544


Sequence

7 reads, 1 reads per million, 1 experiments
auuuucaucaccuagggaucuuguuaaaaggcagauucugauucagggaccaagAUUCUGCAUUUUUAGCAAGUUCccaagugaugcuaa
.....((((((...((((.((((((((((((((((.(((.............))).))))).))))))))))).))))..))))))....

Structure
auuuu      cua    u           -     u   gauuc 
     caucac   ggga cuuguuaaaag gcaga ucu     a
     ||||||   |||| ||||||||||| ||||| |||     g
     guagug   ccCU GAACGAUUUUU CGUCU Aga     g
-aauc      -aa    U           A     U   accag 


Annotation confidence Not enough data
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Genome context
chr24: 42918692-42918781 [+]
Clustered miRNAs
14 other miRNAs are < 10 kb from eca-mir-544-2
Name Accession Chromosome Start End Strand Confidence




Database links

Mature eca-miR-544

Accession MIMAT0013170
Description Equus caballus eca-miR-544 mature miRNA
Sequence 55 - AUUCUGCAUUUUUAGCAAGUUC - 76
Evidence not_experimental

References

  1. PubMed ID: 19406225
    In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
    "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
    "Genomics (2009) 94:125-131